PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015903123.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family GRAS
Protein Properties Length: 526aa    MW: 57582.5 Da    PI: 5.8716
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015903123.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS328.21.6e-1001305181374
            GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn.............sseela 79 
                     lv+lL+++Aea+   +++  la+ +L rl+el+sp++ ++m+Rlaayft AL+  l +++    ++ + ++  ++              +++++a
  XP_015903123.1 130 LVHLLMAAAEALIGANKSrdLARVILVRLKELVSPTDgTNMERLAAYFTDALQGLLEGTGGAHGNSNNNKHFITNGphhhhhhhrdehhQTDVIA 224
                     689********9765555459***********9987769*****************997666655555555443334445567778888999999 PP

            GRAS  80 alklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLakfAe 170
                     a++l++++sP++kf+++taNqaIleav +++r+Hi+D+di++G+QW++L+qaL sR++gpp  +lRiT++++  sg  s  + +etg+rL  fA+
  XP_015903123.1 225 AFQLLQDMSPYVKFGQFTANQAILEAVIQDRRIHIVDYDIMEGIQWASLMQALVSRKDGPPtpHLRITALSRGGSGrrSIGTCQETGRRLVAFAA 319
                     99*******************************************************776556*********888898999************** PP

            GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyy 264
                     ++g pf+f+    ++ e++++++L++ +gEal+Vn++l+l ++  +  ++     ++L+  k+l+P+++++ve+e+   +++ F++rf+++l++y
  XP_015903123.1 320 SIGQPFSFHQCRLDSDESFRPSALKLVKGEALIVNCMLNLPHFSYRAPDSVA---SFLSGSKTLNPRLITLVEEEVAPtGDGGFVARFMDSLYHY 411
                     **********9999*****************************855555555...9*******************8877**************** PP

            GRAS 265 salfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgsl 358
                     sa++dslea++p ++++r+ vEr++lg++i   +a   ++     e+ + W e+l+  GF++vp+s+ ++ qaklll  ++ dgyrvee  ++ l
  XP_015903123.1 412 SAVYDSLEAGFPMQNRARALVERVFLGPRIAGSLARIYRA---HGEEGSPWGEWLSGLGFRAVPISYANQVQAKLLLGIFN-DGYRVEELaNNRL 502
                     **************************************99...677889********************************.******9758899 PP

            GRAS 359 vlgWkdrpLvsvSaWr 374
                     vlgWk+r+L+s+S+W+
  XP_015903123.1 503 VLGWKSRRLLSASVWT 518
                     9**************6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098551.187104498IPR005202Transcription factor GRAS
PfamPF035145.6E-98130518IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MNLVTSATAM AMAIDDALEL DLSSYSTTTT TTTTTTTTGG AITTTTSSPE YDHGCNWNDW  60
SPVVDWDALS GAHDDFRDLI ESMMDEDGEL NSARGVQEAC ISNSTSSSTT DTIRTVDDES  120
NGQDSKGLRL VHLLMAAAEA LIGANKSRDL ARVILVRLKE LVSPTDGTNM ERLAAYFTDA  180
LQGLLEGTGG AHGNSNNNKH FITNGPHHHH HHHRDEHHQT DVIAAFQLLQ DMSPYVKFGQ  240
FTANQAILEA VIQDRRIHIV DYDIMEGIQW ASLMQALVSR KDGPPTPHLR ITALSRGGSG  300
RRSIGTCQET GRRLVAFAAS IGQPFSFHQC RLDSDESFRP SALKLVKGEA LIVNCMLNLP  360
HFSYRAPDSV ASFLSGSKTL NPRLITLVEE EVAPTGDGGF VARFMDSLYH YSAVYDSLEA  420
GFPMQNRARA LVERVFLGPR IAGSLARIYR AHGEEGSPWG EWLSGLGFRA VPISYANQVQ  480
AKLLLGIFND GYRVEELANN RLVLGWKSRR LLSASVWTSS SLDSDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-4616751737374GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015903123.10.0PREDICTED: nodulation-signaling pathway 2 protein
SwissprotQ5NE240.0NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A061FHT30.0A0A061FHT3_THECC; GRAS family transcription factor
STRINGPOPTR_0005s15900.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62643152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-159GRAS family protein